SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 13)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10783226	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10783227	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1635526	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1635528	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1635529	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1793931	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1793933	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1793955	0.81[AMR][1000 genomes]
rs1859444	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3803183	0.83[AMR][1000 genomes]
rs3803184	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3825404	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6580647	0.83[AFR][1000 genomes]

rSNP related genes

Symbol	Regulation type
COL2A1	Proximal transcriptional regulation
COL2A1	Distal transcriptional regulation
COL2A1	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)