SNP Report
Name | rs17122565   dbSNP |
---|---|
Location | chr:12,48412410 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs1018973 | 0.89[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.81[ASN][1000 genomes] |
rs10492080 | 0.82[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap] |
rs10783231 | 0.95[GIH][hapmap];0.95[JPT][hapmap] |
rs10783232 | 0.87[GIH][hapmap];0.95[JPT][hapmap] |
rs11168451 | 0.90[JPT][hapmap] |
rs11168455 | 0.87[GIH][hapmap];0.91[JPT][hapmap] |
rs11609399 | 0.95[JPT][hapmap] |
rs11612578 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs11613485 | 0.91[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap] |
rs12822085 | 0.92[GIH][hapmap];0.95[JPT][hapmap];0.81[TSI][hapmap] |
rs1476608 | 0.91[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap] |
rs17122612 | 0.91[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap] |
rs17122651 | 0.91[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap] |
rs1968071 | 0.91[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap] |
rs3742074 | 0.91[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap] |
rs4075913 | 0.95[JPT][hapmap] |
rs4141065 | 0.95[JPT][hapmap] |
rs4760611 | 0.93[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes] |
rs4760620 | 0.90[GIH][hapmap];0.95[JPT][hapmap] |
rs4760677 | 0.81[ASN][1000 genomes] |
rs4760683 | 0.87[GIH][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap] |
rs4760685 | 0.80[CHD][hapmap];0.95[JPT][hapmap] |
rs4760692 | 0.95[JPT][hapmap] |
rs4760698 | 0.87[GIH][hapmap];0.91[JPT][hapmap] |
rs60629297 | 0.82[ASN][1000 genomes] |
rs6580651 | 0.84[ASN][1000 genomes] |
rs6580656 | 0.89[JPT][hapmap] |
rs6580660 | 0.95[JPT][hapmap] |
rs726354 | 0.82[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap] |
rs72644841 | 0.85[AMR][1000 genomes];0.95[ASN][1000 genomes] |
rs72644842 | 0.81[ASN][1000 genomes] |
rs7296913 | 0.91[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap] |
rs7312326 | 0.95[JPT][hapmap] |
rs7315258 | 0.90[GIH][hapmap];0.95[JPT][hapmap] |
rs7485057 | 0.95[GIH][hapmap];0.95[JPT][hapmap];0.81[TSI][hapmap] |
rs757556 | 0.95[JPT][hapmap] |
rs7959755 | 0.81[ASN][1000 genomes] |
rs7963934 | 0.95[JPT][hapmap] |
rs7969749 | 0.95[JPT][hapmap] |
rs7971668 | 0.95[JPT][hapmap] |
rs879242 | 0.95[JPT][hapmap] |
Symbol | Regulation type |
---|---|
COL2A1 | Distal transcriptional regulation |
ENSG00000257955 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014