SNP Report

Basic Infomation

Name	rs901963 dbSNP
Location	chr:12,48734609
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 26)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1074174	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10783231	0.81[JPT][hapmap]
rs10783232	0.81[CEU][hapmap];0.82[GIH][hapmap];0.81[JPT][hapmap]
rs11168451	0.81[JPT][hapmap]
rs11168455	0.81[CEU][hapmap];0.82[GIH][hapmap]
rs12822085	0.82[GIH][hapmap];0.81[JPT][hapmap]
rs1489111	0.81[CHB][hapmap];0.82[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap]
rs1906717	0.88[CEU][hapmap]
rs2054902	0.82[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap]
rs2258342	0.87[CEU][hapmap];0.81[CHB][hapmap];0.82[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap]
rs2634679	0.82[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap]
rs2634699	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs2732455	0.87[CEU][hapmap];0.81[CHB][hapmap];0.81[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap]
rs2732458	1.00[CEU][hapmap];0.87[GIH][hapmap];0.83[MEX][hapmap];0.87[TSI][hapmap]
rs2732477	0.87[CEU][hapmap];0.81[CHB][hapmap];0.83[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap]
rs2732487	0.87[CEU][hapmap];0.81[CHB][hapmap];0.82[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap]
rs4075913	0.81[JPT][hapmap]
rs4760620	0.81[JPT][hapmap]
rs4760692	0.85[JPT][hapmap]
rs4760698	0.81[CEU][hapmap];0.82[GIH][hapmap]
rs6580660	0.81[CEU][hapmap];0.81[JPT][hapmap]
rs7315258	0.81[JPT][hapmap]
rs7485057	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs7969749	0.81[JPT][hapmap]
rs901962	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.91[TSI][hapmap]
rs901964	0.81[CHB][hapmap];0.83[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
ZNF641	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 2)

eQTL related gene	Source
ASB8	SCAN
PTPN5	SCAN