SNP Report
Basic Infomation
| Name | rs6580657 dbSNP |
|---|---|
| Location | chr:12,48580710 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10783231 | 0.86[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10783232 | 0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10783233 | 0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11168449 | 0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11168451 | 0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11168455 | 0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12822085 | 0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2409001 | 0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4760620 | 0.82[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4760621 | 0.84[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4760692 | 0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4760698 | 0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6580653 | 0.87[ASN][1000 genomes] |
| rs6580656 | 0.88[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6580660 | 0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7294641 | 0.85[AMR][1000 genomes] |
| rs7305418 | 0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7313023 | 0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7315258 | 0.86[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7485057 | 0.87[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7485824 | 0.87[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C12orf68 | Distal transcriptional regulation |
| ENSG00000269514 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014