SNP Report

Basic Infomation

Name	rs34876581 dbSNP
Location	chr:1,1295403
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 62)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10399878	0.84[CHD][hapmap];0.88[JPT][hapmap]
rs10907179	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11260584	0.80[ASW][hapmap];0.96[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.94[MEX][hapmap];0.90[MKK][hapmap];0.82[YRI][hapmap]
rs12089560	0.81[MEX][hapmap]
rs1240707	0.84[GIH][hapmap]
rs12731385	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1536168	0.96[CHD][hapmap];0.94[JPT][hapmap]
rs17160669	0.85[CHD][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.83[ASN][1000 genomes]
rs1810745	0.96[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap]
rs1886772	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1886773	0.83[ASN][1000 genomes]
rs2296471	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2296472	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2296475	1.00[JPT][hapmap]
rs2313198	0.83[ASN][1000 genomes]
rs2477777	0.88[CEU][hapmap];0.88[GIH][hapmap];0.84[MEX][hapmap]
rs2477784	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2649588	0.88[CEU][hapmap];0.88[GIH][hapmap];0.83[MEX][hapmap]
rs2649589	0.88[CEU][hapmap];0.88[GIH][hapmap]
rs2649610	0.99[ASN][1000 genomes]
rs2765021	0.88[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2765023	0.85[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs28890279	0.83[ASN][1000 genomes]
rs307346	0.86[ASN][1000 genomes]
rs307348	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs307349	0.86[ASN][1000 genomes]
rs307354	0.84[ASN][1000 genomes]
rs307355	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs307357	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs307359	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs307364	0.99[ASN][1000 genomes]
rs307365	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs307368	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs307371	0.96[CHD][hapmap];0.92[GIH][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs307380	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap]
rs34380086	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34389364	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34522599	0.83[ASN][1000 genomes]
rs34782209	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35045511	0.83[ASN][1000 genomes]
rs35424002	0.82[MEX][hapmap]
rs35642451	0.83[ASN][1000 genomes]
rs35694341	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35744813	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35955667	0.83[ASN][1000 genomes]
rs35993679	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3766183	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3766185	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3845293	0.93[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.96[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.94[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3845295	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3855956	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3889966	0.83[ASN][1000 genomes]
rs4970365	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4970432	0.87[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.96[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.94[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4970433	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4970439	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs604618	0.92[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap]
rs61766199	0.82[EUR][1000 genomes]
rs61766214	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs619608	1.00[JPT][hapmap]
rs71628956	0.82[ASN][1000 genomes]
rs72896260	0.83[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
MXRA8	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)