SNP Report
Basic Infomation
| Name | rs619608 dbSNP |
|---|---|
| Location | chr:1,1231507 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10399878 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10907179 | 0.83[ASN][1000 genomes] |
| rs11260584 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs1536168 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs17160669 | 0.94[JPT][hapmap] |
| rs1749951 | 1.00[CEU][hapmap];0.88[EUR][1000 genomes] |
| rs1749952 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1749953 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1810745 | 0.94[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs1886772 | 0.83[ASN][1000 genomes] |
| rs1886773 | 0.83[ASN][1000 genomes] |
| rs2296475 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2765021 | 1.00[JPT][hapmap] |
| rs2765023 | 1.00[JPT][hapmap] |
| rs307380 | 1.00[JPT][hapmap] |
| rs34389364 | 1.00[JPT][hapmap] |
| rs34876581 | 1.00[JPT][hapmap] |
| rs3845293 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs4970431 | 0.83[EUR][1000 genomes] |
| rs4970432 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs604618 | 0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs609805 | 0.93[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs621668 | 0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6690013 | 0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ACAP3 | Proximal transcriptional regulation |
| HES4 | Distal transcriptional regulation |
| ACAP3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014