SNP Report
Basic Infomation
| Name | rs1886773 dbSNP |
|---|---|
| Location | chr:1,1254436 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 45)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10399878 | 0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs10449892 | 0.83[EUR][1000 genomes] |
| rs10907179 | 1.00[ASN][1000 genomes] |
| rs11260584 | 0.89[ASN][1000 genomes] |
| rs11488701 | 0.83[AFR][1000 genomes] |
| rs1536168 | 0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1749952 | 0.83[ASN][1000 genomes] |
| rs1749953 | 0.83[ASN][1000 genomes] |
| rs1810745 | 0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1886772 | 1.00[ASN][1000 genomes] |
| rs2296471 | 0.83[ASN][1000 genomes] |
| rs2296472 | 0.90[ASN][1000 genomes] |
| rs2296475 | 0.82[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2477784 | 0.81[ASN][1000 genomes] |
| rs2649610 | 0.82[ASN][1000 genomes] |
| rs2765021 | 0.82[ASN][1000 genomes] |
| rs307346 | 0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs307348 | 0.86[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs307349 | 0.90[ASN][1000 genomes] |
| rs307350 | 0.82[AMR][1000 genomes] |
| rs307354 | 0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs307355 | 0.88[ASN][1000 genomes] |
| rs307357 | 0.83[ASN][1000 genomes] |
| rs307359 | 0.83[ASN][1000 genomes] |
| rs307364 | 0.82[ASN][1000 genomes] |
| rs307368 | 0.81[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs307371 | 0.88[ASN][1000 genomes] |
| rs34380086 | 0.83[ASN][1000 genomes] |
| rs34389364 | 0.83[ASN][1000 genomes] |
| rs34876581 | 0.83[ASN][1000 genomes] |
| rs35694341 | 0.83[ASN][1000 genomes] |
| rs35744813 | 0.92[ASN][1000 genomes] |
| rs35993679 | 0.83[ASN][1000 genomes] |
| rs3766183 | 0.83[ASN][1000 genomes] |
| rs3766185 | 0.83[ASN][1000 genomes] |
| rs3845293 | 0.97[ASN][1000 genomes] |
| rs3855956 | 0.82[ASN][1000 genomes] |
| rs4970365 | 0.83[ASN][1000 genomes] |
| rs4970432 | 1.00[ASN][1000 genomes] |
| rs4970433 | 0.92[ASN][1000 genomes] |
| rs604618 | 0.83[ASN][1000 genomes] |
| rs609805 | 0.81[AMR][1000 genomes] |
| rs61766214 | 0.83[ASN][1000 genomes] |
| rs619608 | 0.83[ASN][1000 genomes] |
| rs62623580 | 0.81[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CPSF3L | Proximal transcriptional regulation |
| ENSG00000240731 | Proximal transcriptional regulation |
| CPSF3L | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014