SNP Report
Basic Infomation
| Name | rs2649610 dbSNP |
|---|---|
| Location | chr:1,1297213 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 47)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10907179 | 0.82[ASN][1000 genomes] |
| rs12731385 | 0.92[ASN][1000 genomes] |
| rs17160669 | 0.84[ASN][1000 genomes] |
| rs1886772 | 0.82[ASN][1000 genomes] |
| rs1886773 | 0.82[ASN][1000 genomes] |
| rs2296471 | 0.99[ASN][1000 genomes] |
| rs2296472 | 0.84[ASN][1000 genomes] |
| rs2313198 | 0.84[ASN][1000 genomes] |
| rs2477784 | 0.84[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2765021 | 0.89[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2765023 | 0.88[ASN][1000 genomes] |
| rs28890279 | 0.84[ASN][1000 genomes] |
| rs307346 | 0.84[ASN][1000 genomes] |
| rs307348 | 0.86[ASN][1000 genomes] |
| rs307349 | 0.85[ASN][1000 genomes] |
| rs307354 | 0.83[ASN][1000 genomes] |
| rs307355 | 0.83[ASN][1000 genomes] |
| rs307357 | 0.99[ASN][1000 genomes] |
| rs307359 | 0.99[ASN][1000 genomes] |
| rs307364 | 0.98[ASN][1000 genomes] |
| rs307365 | 0.91[ASN][1000 genomes] |
| rs307368 | 0.87[ASN][1000 genomes] |
| rs307371 | 0.84[ASN][1000 genomes] |
| rs34380086 | 0.84[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs34389364 | 0.99[ASN][1000 genomes] |
| rs34522599 | 0.84[ASN][1000 genomes] |
| rs34639471 | 0.80[ASN][1000 genomes] |
| rs34782209 | 0.93[ASN][1000 genomes] |
| rs34876581 | 0.99[ASN][1000 genomes] |
| rs35045511 | 0.84[ASN][1000 genomes] |
| rs35642451 | 0.84[ASN][1000 genomes] |
| rs35694341 | 0.99[ASN][1000 genomes] |
| rs35744813 | 0.86[ASN][1000 genomes] |
| rs35955667 | 0.84[ASN][1000 genomes] |
| rs35993679 | 0.99[ASN][1000 genomes] |
| rs3766183 | 0.99[ASN][1000 genomes] |
| rs3766185 | 0.84[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3845295 | 0.89[ASN][1000 genomes] |
| rs3855956 | 0.98[ASN][1000 genomes] |
| rs3889966 | 0.82[ASN][1000 genomes] |
| rs4970365 | 0.84[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4970432 | 0.82[ASN][1000 genomes] |
| rs4970433 | 0.86[ASN][1000 genomes] |
| rs4970439 | 0.80[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs61766214 | 0.84[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs71628956 | 0.83[ASN][1000 genomes] |
| rs72896260 | 0.84[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MXRA8 | Proximal transcriptional regulation |
| AURKAIP1 | Distal transcriptional regulation |
| CCNL2 | Distal transcriptional regulation |
| ENSG00000224870 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014