SNP Report
Name | rs4970365   dbSNP |
---|---|
Location | chr:1,1289911 |
Allele | G/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10907179 | 0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs12731385 | 0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs17160669 | 0.83[ASN][1000 genomes] |
rs1886772 | 0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs1886773 | 0.83[ASN][1000 genomes] |
rs2296471 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2296472 | 0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs2313198 | 0.83[ASN][1000 genomes] |
rs2477784 | 0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2649610 | 0.84[AMR][1000 genomes];0.99[ASN][1000 genomes] |
rs2765021 | 0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2765023 | 0.87[ASN][1000 genomes] |
rs28890279 | 0.83[ASN][1000 genomes] |
rs307346 | 0.86[ASN][1000 genomes] |
rs307348 | 0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs307349 | 0.86[ASN][1000 genomes] |
rs307354 | 0.84[ASN][1000 genomes] |
rs307355 | 0.84[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs307357 | 0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs307359 | 0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs307364 | 0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs307365 | 0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs307368 | 0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs307371 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs34380086 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs34389364 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs34522599 | 0.83[ASN][1000 genomes] |
rs34782209 | 0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs34876581 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs35045511 | 0.83[ASN][1000 genomes] |
rs35642451 | 0.83[ASN][1000 genomes] |
rs35694341 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs35744813 | 0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs35955667 | 0.83[ASN][1000 genomes] |
rs35993679 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3766183 | 0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3766185 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3845293 | 0.80[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs3845295 | 0.90[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs3855956 | 0.99[ASN][1000 genomes] |
rs3889966 | 0.83[ASN][1000 genomes] |
rs4970432 | 0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs4970433 | 0.82[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs4970438 | 0.88[AMR][1000 genomes] |
rs4970439 | 0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs61766214 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs71628956 | 0.82[ASN][1000 genomes] |
rs72896260 | 0.83[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
MXRA8 | Proximal transcriptional regulation |
ATAD3A | Distal transcriptional regulation |
CCNL2 | Distal transcriptional regulation |
ENSG00000224870 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014