SNP Report
Basic Infomation
| Name | rs4970438 dbSNP |
|---|---|
| Location | chr:1,1293343 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11485864 | 0.87[AMR][1000 genomes] |
| rs11488469 | 0.87[AMR][1000 genomes] |
| rs17139966 | 0.82[AMR][1000 genomes] |
| rs2765021 | 0.83[AMR][1000 genomes] |
| rs307357 | 0.81[AMR][1000 genomes] |
| rs307359 | 0.81[AMR][1000 genomes] |
| rs307365 | 0.81[AMR][1000 genomes] |
| rs34380086 | 0.88[AMR][1000 genomes] |
| rs35424002 | 0.90[EUR][1000 genomes] |
| rs3766185 | 0.88[AMR][1000 genomes] |
| rs3813210 | 0.82[EUR][1000 genomes] |
| rs4970365 | 0.88[AMR][1000 genomes] |
| rs4970440 | 0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4970443 | 0.87[AMR][1000 genomes] |
| rs61766214 | 0.88[AMR][1000 genomes] |
| rs62623580 | 0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MXRA8 | Proximal transcriptional regulation |
| TMEM88B | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014