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rVarBase
SNP Report
Basic Infomation
Name
rs11485864  
dbSNP
Location
chr:1,1328971
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11488469
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1695856
1.00[ASN][1000 genomes]
rs17139966
0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2765021
0.81[AMR][1000 genomes]
rs4970373
1.00[ASN][1000 genomes]
rs4970438
0.87[AMR][1000 genomes]
rs4970440
1.00[AMR][1000 genomes]
rs4970443
1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4970450
1.00[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
CCNL2
Proximal transcriptional regulation
ENSG00000225285
Distal transcriptional regulation
VWA1
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)