SNP Report

Basic Infomation

Name	rs604618 dbSNP
Location	chr:1,1232319
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 25)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10399878	0.90[CHB][hapmap];0.84[CHD][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs10907179	0.83[ASN][1000 genomes]
rs11260584	0.81[ASW][hapmap];0.89[CEU][hapmap];0.90[CHB][hapmap];0.96[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1272959	0.87[EUR][1000 genomes]
rs1536168	0.81[CHB][hapmap];0.96[CHD][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs17160669	0.94[JPT][hapmap]
rs1739855	0.89[CEU][hapmap];0.88[TSI][hapmap];0.80[EUR][1000 genomes]
rs1749952	1.00[ASN][1000 genomes]
rs1749953	1.00[ASN][1000 genomes]
rs1810745	0.92[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];0.83[ASN][1000 genomes]
rs1886772	0.83[ASN][1000 genomes]
rs1886773	0.83[ASN][1000 genomes]
rs2296475	0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2477782	0.89[CEU][hapmap]
rs2765021	0.92[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap]
rs2765023	1.00[JPT][hapmap]
rs307371	0.92[CHD][hapmap];0.87[GIH][hapmap]
rs307380	0.92[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap]
rs34389364	0.92[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs34876581	0.92[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap]
rs35424002	0.88[MEX][hapmap]
rs3737720	0.80[EUR][1000 genomes]
rs3845293	0.81[CHB][hapmap];0.96[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.85[ASN][1000 genomes]
rs4970432	0.81[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.83[ASN][1000 genomes]
rs619608	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ACAP3	Proximal transcriptional regulation
ACAP3	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)