SNP Report
Basic Infomation
| Name | rs3737720 dbSNP |
|---|---|
| Location | chr:1,1241800 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11260584 | 0.87[EUR][1000 genomes] |
| rs12408158 | 0.86[ASN][1000 genomes] |
| rs12410087 | 0.86[ASN][1000 genomes] |
| rs1272959 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1739855 | 0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2274262 | 0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2477782 | 0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2887285 | 0.89[ASN][1000 genomes] |
| rs34272775 | 0.84[ASN][1000 genomes] |
| rs3737719 | 0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs604618 | 0.80[EUR][1000 genomes] |
| rs640712 | 0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ACAP3 | Proximal transcriptional regulation |
| PUSL1 | Proximal transcriptional regulation |
| PLEKHN1 | Distal transcriptional regulation |
| HES4 | Distal transcriptional regulation |
| AGRN | Distal transcriptional regulation |
| ENSG00000217801 | Distal transcriptional regulation |
| C1orf159 | Distal transcriptional regulation |
| AURKAIP1 | Distal transcriptional regulation |
| ENSG00000225285 | Distal transcriptional regulation |
| UBE2J2 | Distal transcriptional regulation |
| SCNN1D | Distal transcriptional regulation |
| ACAP3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014