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rVarBase
SNP Report
Basic Infomation
Name
rs34272775  
dbSNP
Location
chr:1,1239180
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs12408158
0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12410087
1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1739855
0.82[ASN][1000 genomes]
rs2239609
0.81[ASN][1000 genomes]
rs2274262
0.84[ASN][1000 genomes]
rs2477782
0.82[ASN][1000 genomes]
rs3737719
0.85[ASN][1000 genomes]
rs3737720
0.84[ASN][1000 genomes]
rs3813208
0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs640712
0.82[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
ACAP3
Proximal transcriptional regulation
PUSL1
Proximal transcriptional regulation
HES4
Distal transcriptional regulation
AURKAIP1
Distal transcriptional regulation
RNF223
Distal transcriptional regulation
UBE2J2
Distal transcriptional regulation
ACAP3
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)