SNP Report
Basic Infomation
| Name | rs307380 dbSNP |
|---|---|
| Location | chr:1,1287127 |
| Allele | G/A/C |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10399878 | 0.84[CHD][hapmap];0.94[JPT][hapmap] |
| rs11260584 | 0.96[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap] |
| rs1536168 | 0.96[CHD][hapmap];0.94[JPT][hapmap] |
| rs17160669 | 0.82[CHD][hapmap];0.94[JPT][hapmap] |
| rs1810745 | 0.92[CHD][hapmap];0.91[GIH][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap] |
| rs2296475 | 1.00[JPT][hapmap] |
| rs2477777 | 0.87[CEU][hapmap];0.83[GIH][hapmap] |
| rs2649588 | 0.86[CEU][hapmap];0.83[GIH][hapmap] |
| rs2649589 | 0.87[CEU][hapmap];0.83[GIH][hapmap] |
| rs2765021 | 0.93[ASW][hapmap];0.87[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.93[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap] |
| rs2765023 | 0.82[CHD][hapmap];1.00[JPT][hapmap] |
| rs307370 | 0.86[YRI][hapmap] |
| rs307371 | 0.92[CHD][hapmap];0.96[GIH][hapmap] |
| rs34389364 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap] |
| rs34876581 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap] |
| rs35424002 | 0.87[ASW][hapmap];0.94[LWK][hapmap];0.94[MEX][hapmap];0.81[MKK][hapmap];0.86[YRI][hapmap] |
| rs3845293 | 1.00[CEU][hapmap];0.89[CHB][hapmap];0.96[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap] |
| rs4970432 | 1.00[CEU][hapmap];0.89[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap] |
| rs604618 | 0.92[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap] |
| rs619608 | 1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DVL1 | Proximal transcriptional regulation |
| AURKAIP1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014