SNP Report

Basic Infomation

Name	rs2477777 dbSNP
Location	chr:1,1314172
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 47)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11488462	1.00[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];0.94[MEX][hapmap];0.81[AMR][1000 genomes]
rs12089560	0.93[CHD][hapmap]
rs1240707	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.82[JPT][hapmap];0.82[LWK][hapmap];0.94[MEX][hapmap];0.81[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1240712	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1240713	0.81[EUR][1000 genomes]
rs1749951	0.85[CHD][hapmap]
rs182532	0.86[CHD][hapmap]
rs2242398	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2260424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2291889	0.93[CHD][hapmap]
rs2368566	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2454652	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2454653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2477776	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2649585	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2649587	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2649588	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2649589	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2649590	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2649591	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2649592	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2649593	0.84[ASN][1000 genomes]
rs2649594	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2765015	0.86[CHD][hapmap]
rs2765021	1.00[CEU][hapmap];0.88[GIH][hapmap]
rs2765027	0.85[CHD][hapmap]
rs2765029	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2765030	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2765031	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2765033	0.93[CHD][hapmap]
rs2765035	0.84[ASN][1000 genomes]
rs28418680	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs307380	0.87[CEU][hapmap];0.83[GIH][hapmap]
rs34389364	0.88[CEU][hapmap];0.88[GIH][hapmap]
rs34429643	0.83[ASN][1000 genomes]
rs34872099	0.86[AMR][1000 genomes]
rs34876581	0.88[CEU][hapmap];0.88[GIH][hapmap];0.84[MEX][hapmap]
rs35242196	0.88[JPT][hapmap]
rs35745967	0.84[ASN][1000 genomes]
rs3845293	0.88[CEU][hapmap]
rs4970372	0.82[AMR][1000 genomes]
rs4970432	0.88[CEU][hapmap];0.83[GIH][hapmap]
rs4970444	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4970446	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4970447	0.82[AMR][1000 genomes]
rs4970448	0.82[AMR][1000 genomes]
rs4970449	0.81[AMR][1000 genomes]

rSNP related genes

Symbol	Regulation type
AURKAIP1	Proximal transcriptional regulation
TMEM88B	Distal transcriptional regulation
CCNL2	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)