SNP Report
Basic Infomation
| Name | rs12089560 dbSNP |
|---|---|
| Location | chr:1,1356550 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11488462 | 0.88[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1240707 | 0.93[CHD][hapmap];0.85[GIH][hapmap] |
| rs1240712 | 0.83[EUR][1000 genomes] |
| rs1240717 | 0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1240719 | 0.85[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs1240720 | 0.85[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs1695852 | 0.80[ASN][1000 genomes] |
| rs1695853 | 0.80[ASN][1000 genomes] |
| rs1695854 | 0.80[ASN][1000 genomes] |
| rs1695855 | 0.83[ASN][1000 genomes] |
| rs1781133 | 0.89[ASN][1000 genomes] |
| rs1781135 | 0.80[ASN][1000 genomes] |
| rs1781136 | 0.80[ASN][1000 genomes] |
| rs2291889 | 0.85[CHD][hapmap] |
| rs2477777 | 0.93[CHD][hapmap] |
| rs2649588 | 0.93[CHD][hapmap] |
| rs2649589 | 0.93[CHD][hapmap] |
| rs2765033 | 0.85[CHD][hapmap] |
| rs34817085 | 0.88[ASN][1000 genomes] |
| rs34872099 | 0.82[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs34876581 | 0.81[MEX][hapmap] |
| rs3766165 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4970372 | 0.80[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4970447 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4970448 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4970449 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs904589 | 0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TMEM88B | Proximal transcriptional regulation |
| ANKRD65 | Proximal transcriptional regulation |
| ENSG00000264293 | Distal transcriptional regulation |
| MRPL20 | Distal transcriptional regulation |
| ENSG00000225285 | Distal transcriptional regulation |
| VWA1 | Distal transcriptional regulation |
| TMEM88B | Distal transcriptional regulation |
| CCNL2 | Distal transcriptional regulation |
| ENSG00000224870 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014