SNP Report

Basic Infomation

Name	rs904589 dbSNP
Location	chr:1,1354515
Allele	C/G

LD-proxy of rSNPs(r²>0.8) (count: 27)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11488462	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12089560	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1240707	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1240712	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1240713	0.92[EUR][1000 genomes]
rs1240716	0.88[EUR][1000 genomes]
rs1240717	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1240719	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1240720	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1695855	0.80[ASN][1000 genomes]
rs1781133	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1781134	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2649585	0.83[EUR][1000 genomes]
rs2649587	0.83[EUR][1000 genomes]
rs2765029	0.82[EUR][1000 genomes]
rs2765030	0.83[EUR][1000 genomes]
rs2801380	0.82[AFR][1000 genomes]
rs28418680	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28756423	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34817085	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34872099	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3766165	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4970372	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4970446	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4970447	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4970448	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4970449	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000225905	Proximal transcriptional regulation
ANKRD65	Proximal transcriptional regulation
MRPL20	Distal transcriptional regulation
ENSG00000225285	Distal transcriptional regulation
VWA1	Distal transcriptional regulation
ENSG00000224870	Distal transcriptional regulation
ENSG00000264293	Distal transcriptional regulation
TMEM88B	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)