SNP Report

Basic Infomation

Name	rs2765030 dbSNP
Location	chr:1,1316648
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 38)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11488462	0.83[EUR][1000 genomes]
rs1240707	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1240712	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1240713	0.85[EUR][1000 genomes]
rs1240717	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1240719	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1240720	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2242398	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2260424	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2368566	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2454652	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2454653	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2477776	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2477777	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2649585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2649587	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2649588	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2649589	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2649590	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2649591	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2649592	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2649593	0.83[ASN][1000 genomes]
rs2649594	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2765029	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2765031	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2765035	0.82[ASN][1000 genomes]
rs28418680	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34429643	0.84[ASN][1000 genomes]
rs34872099	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35745967	0.83[ASN][1000 genomes]
rs3766165	0.83[EUR][1000 genomes]
rs4970372	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4970444	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4970446	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4970447	0.83[EUR][1000 genomes]
rs4970448	0.83[EUR][1000 genomes]
rs4970449	0.83[EUR][1000 genomes]
rs904589	0.83[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000224870	Distal transcriptional regulation
AURKAIP1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)