SNP Report

Basic Infomation

Name	rs2242398 dbSNP
Location	chr:1,1310668
Allele	A/C

LD-proxy of rSNPs(r²>0.8) (count: 29)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1240707	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1240712	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1240719	0.81[AMR][1000 genomes]
rs1240720	0.81[AMR][1000 genomes]
rs2260424	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2368566	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2454652	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2454653	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2477776	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2477777	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2649585	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2649587	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2649588	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2649589	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2649590	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2649591	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2649592	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2649593	0.84[ASN][1000 genomes]
rs2649594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2765029	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2765030	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2765031	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2765035	0.84[ASN][1000 genomes]
rs28418680	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs34429643	0.83[ASN][1000 genomes]
rs34782209	0.84[AMR][1000 genomes]
rs35745967	0.84[ASN][1000 genomes]
rs4970444	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4970446	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
AURKAIP1	Proximal transcriptional regulation
ENSG00000223663	Proximal transcriptional regulation
CALM1	Distal transcriptional regulation
ATAD3B	Distal transcriptional regulation
HES4	Distal transcriptional regulation
C1orf159	Distal transcriptional regulation
ENSG00000225285	Distal transcriptional regulation
VWA1	Distal transcriptional regulation
CPSF3L	Distal transcriptional regulation
GLTPD1	Distal transcriptional regulation
ENSG00000230415	Distal transcriptional regulation
ACAP3	Distal transcriptional regulation
PUSL1	Distal transcriptional regulation
DVL1	Distal transcriptional regulation
MXRA8	Distal transcriptional regulation
MRPL20	Distal transcriptional regulation
CCNL2	Distal transcriptional regulation
ENSG00000224870	Distal transcriptional regulation
UBE2J2	Distal transcriptional regulation
ENSG00000188825	Distal transcriptional regulation
AURKAIP1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)