SNP Report
Basic Infomation
| Name | rs34817085 dbSNP |
|---|---|
| Location | chr:1,1350601 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11488462 | 0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12089560 | 0.88[ASN][1000 genomes] |
| rs1240707 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1240712 | 0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1240713 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1240716 | 0.81[EUR][1000 genomes] |
| rs1240717 | 0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1240719 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1240720 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1781133 | 0.87[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1781134 | 0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2765029 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs28418680 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs28756423 | 0.82[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs34872099 | 0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3766165 | 0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4970372 | 0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4970444 | 0.82[AMR][1000 genomes] |
| rs4970446 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4970447 | 0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4970448 | 0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4970449 | 0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs904589 | 0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CCNL2 | Distal transcriptional regulation |
| ENSG00000224870 | Distal transcriptional regulation |
| ANKRD65 | Distal transcriptional regulation |
| ENSG00000225905 | Distal transcriptional regulation |
| MRPL20 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014