SNP Report

Basic Infomation

Name	rs2291889 dbSNP
Location	chr:1,1335218
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 42)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10449892	0.86[AFR][1000 genomes]
rs11488462	0.85[CHD][hapmap]
rs11587525	0.86[AFR][1000 genomes]
rs12073590	1.00[CEU][hapmap]
rs12089560	0.85[CHD][hapmap]
rs1240707	0.93[CHD][hapmap]
rs1749951	0.92[CHD][hapmap];1.00[LWK][hapmap]
rs182532	1.00[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[LWK][hapmap]
rs188647	0.86[AFR][1000 genomes]
rs2296474	0.82[CHB][hapmap];0.86[AFR][1000 genomes]
rs2368565	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2454654	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2477775	1.00[AFR][1000 genomes]
rs2477777	0.93[CHD][hapmap]
rs2649586	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2649588	0.93[CHD][hapmap]
rs2649589	0.93[CHD][hapmap]
rs2649598	1.00[AFR][1000 genomes]
rs2649608	0.86[AFR][1000 genomes]
rs2649613	0.86[AFR][1000 genomes]
rs2765015	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.92[CHD][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes]
rs2765017	0.86[AFR][1000 genomes]
rs2765024	0.86[AFR][1000 genomes]
rs2765025	1.00[CHB][hapmap];0.86[AFR][1000 genomes]
rs2765027	1.00[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[LWK][hapmap];0.86[AFR][1000 genomes]
rs2765032	1.00[AFR][1000 genomes]
rs2765033	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2985898	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs307351	0.86[AFR][1000 genomes]
rs307356	0.86[AFR][1000 genomes]
rs307358	0.86[AFR][1000 genomes]
rs307361	0.86[AFR][1000 genomes]
rs307363	0.86[AFR][1000 genomes]
rs307369	0.86[AFR][1000 genomes]
rs307373	0.86[AFR][1000 genomes]
rs307374	0.86[AFR][1000 genomes]
rs307377	0.86[AFR][1000 genomes]
rs307378	1.00[ASW][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[AFR][1000 genomes]
rs307379	0.86[AFR][1000 genomes]
rs3104610	0.86[AFR][1000 genomes]
rs35299041	0.98[ASN][1000 genomes]
rs3753340	1.00[CEU][hapmap]

rSNP related genes

Symbol	Regulation type
CCNL2	Proximal transcriptional regulation
ENSG00000224870	Proximal transcriptional regulation
HSP90AB1	Distal transcriptional regulation
HES4	Distal transcriptional regulation
MIB2	Distal transcriptional regulation
ENSG00000225285	Distal transcriptional regulation
VWA1	Distal transcriptional regulation
TMEM88B	Distal transcriptional regulation
ATAD3B	Distal transcriptional regulation
ANKRD65	Distal transcriptional regulation
MXRA8	Distal transcriptional regulation
ATAD3A	Distal transcriptional regulation
C9orf169	Distal transcriptional regulation
RNF224	Distal transcriptional regulation
CPSF3L	Distal transcriptional regulation
DVL1	Distal transcriptional regulation
AURKAIP1	Distal transcriptional regulation
CCNL2	Distal transcriptional regulation
ENSG00000225905	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)