SNP Report
Basic Infomation
| Name | rs2985898 dbSNP |
|---|---|
| Location | chr:1,1318351 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 42)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10449892 | 0.86[AFR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11587525 | 0.86[AFR][1000 genomes];0.87[ASN][1000 genomes] |
| rs13249 | 0.96[ASN][1000 genomes] |
| rs188647 | 0.86[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2260423 | 1.00[ASN][1000 genomes] |
| rs2291889 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2296474 | 0.86[AFR][1000 genomes] |
| rs2313197 | 0.87[ASN][1000 genomes] |
| rs2368565 | 1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2454654 | 1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2477775 | 1.00[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2649586 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2649595 | 0.88[ASN][1000 genomes] |
| rs2649597 | 0.98[ASN][1000 genomes] |
| rs2649598 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2649608 | 0.86[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2649611 | 1.00[ASN][1000 genomes] |
| rs2649613 | 0.86[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2765015 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2765017 | 0.86[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2765019 | 1.00[ASN][1000 genomes] |
| rs2765024 | 0.86[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2765025 | 0.86[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2765027 | 0.86[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2765032 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2765033 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2765035 | 0.91[ASN][1000 genomes] |
| rs307351 | 0.86[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs307353 | 0.96[ASN][1000 genomes] |
| rs307356 | 0.86[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs307358 | 0.86[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs307361 | 0.86[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs307363 | 0.86[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs307369 | 0.86[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs307372 | 0.92[ASN][1000 genomes] |
| rs307373 | 0.86[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs307374 | 0.86[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs307377 | 0.86[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs307378 | 0.86[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs307379 | 0.86[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs307381 | 1.00[ASN][1000 genomes] |
| rs3104610 | 0.86[AFR][1000 genomes];0.96[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000223663 | Distal transcriptional regulation |
| ENSG00000224870 | Distal transcriptional regulation |
| ENSG00000264293 | Distal transcriptional regulation |
| MRPL20 | Distal transcriptional regulation |
| AURKAIP1 | Distal transcriptional regulation |
| CCNL2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014