SNP Report
Basic Infomation
| Name | rs182532 dbSNP |
|---|---|
| Location | chr:1,1287040 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1240707 | 0.85[CHD][hapmap] |
| rs1749951 | 1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap] |
| rs2291889 | 1.00[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[LWK][hapmap] |
| rs2296474 | 1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs2477777 | 0.86[CHD][hapmap] |
| rs2649588 | 0.86[CHD][hapmap];0.80[JPT][hapmap] |
| rs2649589 | 0.85[CHD][hapmap] |
| rs2765015 | 1.00[ASW][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs2765025 | 1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap] |
| rs2765027 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap] |
| rs2765033 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap] |
| rs307378 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs4970431 | 1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DVL1 | Proximal transcriptional regulation |
| AURKAIP1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014