SNP Report
Basic Infomation
| Name | rs35242196 dbSNP |
|---|---|
| Location | chr:1,1333598 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1171 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1240707 | 0.93[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs1240712 | 0.81[ASN][1000 genomes] |
| rs12408046 | 0.92[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs12408051 | 0.86[AMR][1000 genomes] |
| rs12746510 | 0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs17160669 | 0.95[GIH][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap] |
| rs17363048 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2275915 | 1.00[ASN][1000 genomes] |
| rs2477777 | 0.88[JPT][hapmap] |
| rs2649588 | 0.87[JPT][hapmap] |
| rs2649589 | 0.88[JPT][hapmap] |
| rs2649593 | 0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2765023 | 0.95[GIH][hapmap];0.84[MEX][hapmap];0.93[TSI][hapmap] |
| rs28418680 | 0.81[ASN][1000 genomes] |
| rs28876135 | 0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs34429643 | 0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs34442823 | 0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs34734423 | 0.94[AMR][1000 genomes] |
| rs35035339 | 0.83[EUR][1000 genomes] |
| rs35745967 | 0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs3889966 | 0.82[AMR][1000 genomes] |
| rs4970446 | 0.83[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000224870 | Proximal transcriptional regulation |
| HES4 | Distal transcriptional regulation |
| ATAD3B | Distal transcriptional regulation |
| ATAD3A | Distal transcriptional regulation |
| ENSG00000225285 | Distal transcriptional regulation |
| VWA1 | Distal transcriptional regulation |
| TMEM88B | Distal transcriptional regulation |
| AURKAIP1 | Distal transcriptional regulation |
| DVL1 | Distal transcriptional regulation |
| MXRA8 | Distal transcriptional regulation |
| CCNL2 | Distal transcriptional regulation |
| ANKRD65 | Distal transcriptional regulation |
| ENSG00000225905 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| MRPL20 | Pritchard |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014