SNP Report
Basic Infomation
| Name | rs2275915 dbSNP |
|---|---|
| Location | chr:1,1342612 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1171 | 1.00[ASN][1000 genomes] |
| rs1240707 | 0.83[ASN][1000 genomes] |
| rs1240712 | 0.81[ASN][1000 genomes] |
| rs17363048 | 0.97[ASN][1000 genomes] |
| rs2649593 | 0.83[ASN][1000 genomes] |
| rs28418680 | 0.81[ASN][1000 genomes] |
| rs28876135 | 0.95[ASN][1000 genomes] |
| rs34429643 | 0.82[ASN][1000 genomes] |
| rs34442823 | 0.96[ASN][1000 genomes] |
| rs35242196 | 1.00[ASN][1000 genomes] |
| rs35745967 | 0.83[ASN][1000 genomes] |
| rs4970446 | 0.83[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MRPL20 | Proximal transcriptional regulation |
| ENSG00000264293 | Proximal transcriptional regulation |
| MAPK12 | Distal transcriptional regulation |
| ENSG00000225285 | Distal transcriptional regulation |
| VWA1 | Distal transcriptional regulation |
| TMEM88B | Distal transcriptional regulation |
| ATAD3A | Distal transcriptional regulation |
| MIB2 | Distal transcriptional regulation |
| ANKRD65 | Distal transcriptional regulation |
| ENSG00000225905 | Distal transcriptional regulation |
| SCNN1D | Distal transcriptional regulation |
| DVL1 | Distal transcriptional regulation |
| AURKAIP1 | Distal transcriptional regulation |
| ATAD3B | Distal transcriptional regulation |
| HIST2H2BE | Distal transcriptional regulation |
| HIST2H2AC | Distal transcriptional regulation |
| BOLA1 | Distal transcriptional regulation |
| HIST2H2AB | Distal transcriptional regulation |
| MRPL20 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014