SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 15)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1240707	0.80[ASN][1000 genomes]
rs12408046	0.92[AMR][1000 genomes]
rs12408051	0.86[AMR][1000 genomes]
rs12746510	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2275915	0.97[ASN][1000 genomes]
rs2649593	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28876135	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34429643	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34442823	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34734423	0.94[AMR][1000 genomes]
rs35242196	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35745967	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3889966	0.82[AMR][1000 genomes]
rs4970446	0.80[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CCNL2	Proximal transcriptional regulation
ANKRD65	Distal transcriptional regulation
AURKAIP1	Distal transcriptional regulation
TMEM88B	Distal transcriptional regulation
ENSG00000225285	Distal transcriptional regulation
VWA1	Distal transcriptional regulation
MRPL20	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)