SNP Report
Basic Infomation
| Name | rs12408051 dbSNP |
|---|---|
| Location | chr:1,1308387 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 29)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1171 | 0.86[AMR][1000 genomes] |
| rs12408046 | 0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs12746510 | 0.93[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs17160669 | 0.89[EUR][1000 genomes] |
| rs17363048 | 0.86[AMR][1000 genomes] |
| rs2313198 | 0.83[EUR][1000 genomes] |
| rs2649593 | 0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs2765023 | 0.83[EUR][1000 genomes] |
| rs28503348 | 0.84[EUR][1000 genomes] |
| rs28876135 | 0.82[EUR][1000 genomes] |
| rs28890279 | 0.84[EUR][1000 genomes] |
| rs34316807 | 0.90[EUR][1000 genomes] |
| rs34429643 | 0.85[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs34442823 | 0.84[AMR][1000 genomes] |
| rs34457386 | 0.89[EUR][1000 genomes] |
| rs34522599 | 0.84[EUR][1000 genomes] |
| rs34639471 | 0.84[EUR][1000 genomes] |
| rs34734423 | 0.89[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs35045511 | 0.89[EUR][1000 genomes] |
| rs35125219 | 0.80[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs35194784 | 0.89[EUR][1000 genomes] |
| rs35242196 | 0.86[AMR][1000 genomes] |
| rs35566806 | 0.89[EUR][1000 genomes] |
| rs35642451 | 0.84[EUR][1000 genomes] |
| rs35745967 | 0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs35955667 | 0.84[EUR][1000 genomes] |
| rs36087904 | 0.82[EUR][1000 genomes] |
| rs71628956 | 0.84[EUR][1000 genomes] |
| rs72896260 | 0.84[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ATAD3A | Distal transcriptional regulation |
| ATAD3C | Distal transcriptional regulation |
| ATAD3B | Distal transcriptional regulation |
| HES4 | Distal transcriptional regulation |
| C1orf159 | Distal transcriptional regulation |
| ACAP3 | Distal transcriptional regulation |
| PUSL1 | Distal transcriptional regulation |
| GLTPD1 | Distal transcriptional regulation |
| DVL1 | Distal transcriptional regulation |
| MXRA8 | Distal transcriptional regulation |
| CCNL2 | Distal transcriptional regulation |
| ENSG00000224870 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014