SNP Report

Basic Infomation

Name	rs28503348 dbSNP
Location	chr:1,1300578
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 29)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs12408046	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12408051	0.84[EUR][1000 genomes]
rs12746510	0.80[EUR][1000 genomes]
rs17160669	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2313198	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2477784	0.80[ASN][1000 genomes]
rs2649593	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2765023	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28368296	0.90[AMR][1000 genomes]
rs28821228	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs28890279	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2936661	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs34316807	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34429643	0.80[EUR][1000 genomes]
rs34457386	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34522599	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34639471	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34734423	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35045511	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35125219	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35194784	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35566806	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35642451	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35745967	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35955667	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36087904	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3889966	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71628956	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72896260	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
MXRA8	Proximal transcriptional regulation
MXRA8	Distal transcriptional regulation
AURKAIP1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)