SNP Report
Basic Infomation
| Name | rs28368296 dbSNP |
|---|---|
| Location | chr:1,1299366 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs17160669 | 0.89[AMR][1000 genomes] |
| rs2313198 | 0.82[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs28503348 | 0.90[AMR][1000 genomes] |
| rs28821228 | 0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28890279 | 0.82[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs2936661 | 0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs34316807 | 0.86[AMR][1000 genomes] |
| rs34457386 | 0.89[AMR][1000 genomes] |
| rs34522599 | 0.89[AMR][1000 genomes] |
| rs34639471 | 0.82[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs35045511 | 0.81[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs35056373 | 0.87[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs35125219 | 0.84[AMR][1000 genomes] |
| rs35194784 | 0.89[AMR][1000 genomes] |
| rs35566806 | 0.89[AMR][1000 genomes] |
| rs35642451 | 0.82[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs35955667 | 0.82[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs36087904 | 0.90[AMR][1000 genomes] |
| rs71628956 | 0.82[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs72896260 | 0.82[AFR][1000 genomes];0.90[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MXRA8 | Proximal transcriptional regulation |
| MXRA8 | Distal transcriptional regulation |
| AURKAIP1 | Distal transcriptional regulation |
| ENSG00000225905 | Distal transcriptional regulation |
| ANKRD65 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014