SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 8)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10399878	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1536168	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1749952	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1749953	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2296475	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs609805	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs619608	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6690013	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SCNN1D	Proximal transcriptional regulation
ENSG00000224969	Distal transcriptional regulation
ISG15	Distal transcriptional regulation
SAMD11	Distal transcriptional regulation
NOC2L	Distal transcriptional regulation
HES4	Distal transcriptional regulation
B3GALT6	Distal transcriptional regulation
UBE2J2	Distal transcriptional regulation
ACAP3	Distal transcriptional regulation
RNF223	Distal transcriptional regulation
C1orf159	Distal transcriptional regulation
ENSG00000223823	Distal transcriptional regulation
ENSG00000230415	Distal transcriptional regulation
SCNN1D	Distal transcriptional regulation
SCNN1D	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)