SNP Report
Basic Infomation
| Name | rs61766199 dbSNP |
|---|---|
| Location | chr:1,1260168 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10907179 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs1886772 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs2296471 | 0.82[EUR][1000 genomes] |
| rs2296472 | 0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs307348 | 0.93[EUR][1000 genomes] |
| rs307349 | 0.84[EUR][1000 genomes] |
| rs307355 | 0.88[EUR][1000 genomes] |
| rs307365 | 0.82[EUR][1000 genomes] |
| rs307368 | 0.89[EUR][1000 genomes] |
| rs307371 | 0.91[EUR][1000 genomes] |
| rs34389364 | 0.82[EUR][1000 genomes] |
| rs34876581 | 0.82[EUR][1000 genomes] |
| rs35694341 | 0.82[EUR][1000 genomes] |
| rs35744813 | 0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs35993679 | 0.82[EUR][1000 genomes] |
| rs3766183 | 0.81[EUR][1000 genomes] |
| rs3845293 | 0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4970432 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs4970433 | 0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CPSF3L | Proximal transcriptional regulation |
| GLTPD1 | Proximal transcriptional regulation |
| ALDH3A2 | Distal transcriptional regulation |
| AURKAIP1 | Distal transcriptional regulation |
| GLTPD1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014