SNP Report

Basic Infomation

Name	rs2880648 dbSNP
Location	chr:10,82315733
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 36)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11186029	0.88[YRI][hapmap]
rs11186034	0.88[CHB][hapmap];0.81[ASN][1000 genomes]
rs11186045	0.87[CHB][hapmap];0.81[ASN][1000 genomes]
rs11186133	0.88[YRI][hapmap]
rs11186146	0.87[YRI][hapmap]
rs11186202	0.88[YRI][hapmap]
rs12248820	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12250562	1.00[YRI][hapmap]
rs12257493	1.00[YRI][hapmap]
rs12259358	0.81[CEU][hapmap]
rs12260841	0.81[JPT][hapmap]
rs12262853	0.88[YRI][hapmap]
rs12267227	0.88[YRI][hapmap]
rs12268524	1.00[CEU][hapmap]
rs12269602	0.88[YRI][hapmap]
rs12413288	0.81[JPT][hapmap]
rs1870136	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs2125037	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2168719	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2343555	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4268454	0.88[EUR][1000 genomes]
rs4291622	0.90[EUR][1000 genomes]
rs4547039	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61372324	0.80[ASN][1000 genomes]
rs6586068	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6586088	0.95[CEU][hapmap]
rs7078901	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7079232	0.81[ASN][1000 genomes]
rs7095190	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7098909	1.00[CEU][hapmap];0.80[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7894899	1.00[CEU][hapmap]
rs7900954	0.81[CHB][hapmap];0.81[ASN][1000 genomes]
rs7904697	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7905141	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7905288	0.81[ASN][1000 genomes]
rs7914650	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SH2D4B	Distal transcriptional regulation
SH2D4B	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)