SNP Report
Basic Infomation
| Name | rs12413288 dbSNP |
|---|---|
| Location | chr:10,82312609 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11186011 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11186034 | 0.88[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs11186045 | 0.93[CHB][hapmap];0.94[JPT][hapmap] |
| rs11186111 | 0.83[EUR][1000 genomes] |
| rs12248820 | 0.80[CHB][hapmap] |
| rs12260841 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12412983 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs17107060 | 0.83[EUR][1000 genomes] |
| rs1870136 | 1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs2343527 | 0.86[CHB][hapmap];0.88[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2343555 | 0.92[ASN][1000 genomes] |
| rs28493052 | 1.00[EUR][1000 genomes] |
| rs2880648 | 0.81[JPT][hapmap] |
| rs60575307 | 1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6586068 | 0.80[CHB][hapmap] |
| rs7068369 | 0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs7079069 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7097741 | 0.88[ASN][1000 genomes] |
| rs7098909 | 1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs7099612 | 0.89[ASN][1000 genomes] |
| rs73307107 | 1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs73307156 | 0.83[EUR][1000 genomes] |
| rs73307172 | 0.83[EUR][1000 genomes] |
| rs7900954 | 0.81[CHB][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs7914650 | 0.80[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SH2D4B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014