SNP Report

Basic Infomation

Name	rs12248820 dbSNP
Location	chr:10,82326731
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 29)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11186034	0.87[CHB][hapmap];0.82[ASN][1000 genomes]
rs11186045	0.87[CHB][hapmap];0.83[ASN][1000 genomes]
rs12259358	0.80[CEU][hapmap]
rs12260841	0.80[CHB][hapmap]
rs12268524	1.00[CEU][hapmap];0.82[TSI][hapmap]
rs12413288	0.80[CHB][hapmap]
rs1870136	0.80[CHB][hapmap];0.84[GIH][hapmap];0.83[JPT][hapmap]
rs2125037	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2168719	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2343555	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2880648	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4268454	0.89[EUR][1000 genomes]
rs4291622	0.92[EUR][1000 genomes]
rs4547039	1.00[CEU][hapmap];0.90[GIH][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs61372324	0.82[ASN][1000 genomes]
rs6586067	0.81[ASN][1000 genomes]
rs6586068	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6586088	0.95[CEU][hapmap]
rs7078901	1.00[CEU][hapmap];0.90[GIH][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs7079232	0.83[ASN][1000 genomes]
rs7095190	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7098909	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];0.80[LWK][hapmap];0.90[MEX][hapmap];0.85[MKK][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7894899	1.00[CEU][hapmap]
rs7900954	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs7904697	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7905141	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7905288	0.83[ASN][1000 genomes]
rs7914650	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9665686	0.82[YRI][hapmap]

rSNP related genes

Symbol	Regulation type
SH2D4B	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 2)

eQTL related gene	Source
PHB2	SCAN
TSPAN14	SCAN