SNP Report
Basic Infomation
| Name | rs2343555 dbSNP |
|---|---|
| Location | chr:10,82307949 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11186011 | 0.93[ASN][1000 genomes] |
| rs12248820 | 0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs12260841 | 0.92[ASN][1000 genomes] |
| rs12412983 | 0.92[ASN][1000 genomes] |
| rs12413288 | 0.92[ASN][1000 genomes] |
| rs1870136 | 1.00[ASN][1000 genomes] |
| rs2125037 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs2168719 | 0.83[EUR][1000 genomes] |
| rs2343527 | 0.88[ASN][1000 genomes] |
| rs2880648 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4268454 | 0.83[EUR][1000 genomes] |
| rs4291622 | 0.87[EUR][1000 genomes] |
| rs4547039 | 0.87[EUR][1000 genomes] |
| rs60575307 | 0.87[ASN][1000 genomes] |
| rs6586068 | 0.94[EUR][1000 genomes] |
| rs7068369 | 0.91[ASN][1000 genomes] |
| rs7078901 | 0.87[EUR][1000 genomes] |
| rs7079069 | 0.95[ASN][1000 genomes] |
| rs7095190 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7097741 | 0.96[ASN][1000 genomes] |
| rs7098909 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7099612 | 0.97[ASN][1000 genomes] |
| rs73307107 | 0.87[ASN][1000 genomes] |
| rs7904697 | 0.83[EUR][1000 genomes] |
| rs7905141 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7914650 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SH2D4B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014