SNP Report

Basic Infomation

Name	rs4547039 dbSNP
Location	chr:10,82335209
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 33)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11186148	0.81[JPT][hapmap];0.82[EUR][1000 genomes]
rs11186151	0.82[EUR][1000 genomes]
rs11814516	0.89[JPT][hapmap];0.98[ASN][1000 genomes]
rs12248820	1.00[CEU][hapmap];0.90[GIH][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs12259358	0.80[CEU][hapmap]
rs12268524	1.00[CEU][hapmap];0.82[TSI][hapmap];0.82[EUR][1000 genomes]
rs12569530	0.96[ASN][1000 genomes]
rs12569542	0.93[ASN][1000 genomes]
rs1573973	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs17107060	0.95[JPT][hapmap]
rs17107064	0.90[JPT][hapmap]
rs2125037	0.89[EUR][1000 genomes]
rs2168719	0.82[CEU][hapmap]
rs2343555	0.87[EUR][1000 genomes]
rs2880648	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4268454	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4291622	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4578323	0.99[ASN][1000 genomes]
rs6586068	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs6586088	0.95[CEU][hapmap];0.82[TSI][hapmap];0.82[EUR][1000 genomes]
rs6586090	0.82[EUR][1000 genomes]
rs7072583	0.99[ASN][1000 genomes]
rs7078901	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7094314	1.00[CHB][hapmap];0.97[CHD][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs7095190	0.92[EUR][1000 genomes]
rs7098909	1.00[CEU][hapmap];0.90[GIH][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes]
rs7894899	1.00[CEU][hapmap];0.81[JPT][hapmap];0.82[EUR][1000 genomes]
rs7902939	0.98[ASN][1000 genomes]
rs7904557	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7905141	0.89[EUR][1000 genomes]
rs7912629	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7914650	1.00[CEU][hapmap];0.90[GIH][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs7917419	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SH2D4B	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 2)

eQTL related gene	Source
KATNB1	SCAN
TSPAN14	SCAN