SNP Report
Basic Infomation
| Name | rs12569542 dbSNP |
|---|---|
| Location | chr:10,82332897 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10881776 | 0.87[AMR][1000 genomes] |
| rs11186102 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs11186128 | 0.89[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs11186135 | 0.83[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs11186141 | 0.91[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs11814516 | 0.93[ASN][1000 genomes] |
| rs12569530 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1573973 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4291622 | 0.93[ASN][1000 genomes] |
| rs4547039 | 0.93[ASN][1000 genomes] |
| rs4578323 | 0.95[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7072583 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7078901 | 0.93[ASN][1000 genomes] |
| rs7094314 | 0.94[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7902939 | 0.92[ASN][1000 genomes] |
| rs7904557 | 0.94[ASN][1000 genomes] |
| rs7912629 | 0.94[ASN][1000 genomes] |
| rs7917419 | 0.94[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SH2D4B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014