SNP Report
Basic Infomation
| Name | rs11186102 dbSNP |
|---|---|
| Location | chr:10,82331567 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10881776 | 0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11186024 | 0.86[EUR][1000 genomes] |
| rs11186064 | 0.90[EUR][1000 genomes] |
| rs11186128 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11186135 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11186141 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12569530 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs12569542 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs1573973 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs34369840 | 0.93[EUR][1000 genomes] |
| rs34413309 | 0.86[EUR][1000 genomes] |
| rs59577534 | 0.86[EUR][1000 genomes] |
| rs7072583 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs7096348 | 0.86[EUR][1000 genomes] |
| rs71483311 | 0.93[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SH2D4B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014