SNP Report
Basic Infomation
| Name | rs34413309 dbSNP |
|---|---|
| Location | chr:10,82345741 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11186102 | 0.86[EUR][1000 genomes] |
| rs11186128 | 0.86[EUR][1000 genomes] |
| rs11186135 | 0.84[EUR][1000 genomes] |
| rs11186141 | 0.86[EUR][1000 genomes] |
| rs12247537 | 0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12766852 | 0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12770270 | 0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs17107311 | 0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs34369840 | 0.83[EUR][1000 genomes] |
| rs34515119 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs34637151 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs35740944 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs35743232 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs36093436 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs59038521 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs59577534 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs71483311 | 0.83[EUR][1000 genomes] |
| rs7901404 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7923028 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SH2D4B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014