SNP Report

Basic Infomation

Name	rs1573973 dbSNP
Location	chr:10,82334411
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 34)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10881776	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11186024	1.00[CEU][hapmap]
rs11186064	0.81[EUR][1000 genomes]
rs11186102	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11186128	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11186135	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11186141	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11186148	0.81[JPT][hapmap]
rs11814516	0.89[JPT][hapmap];0.99[ASN][1000 genomes]
rs12247537	1.00[CEU][hapmap];0.81[TSI][hapmap]
rs12569530	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12569542	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12766852	1.00[CEU][hapmap];0.81[TSI][hapmap]
rs12770270	1.00[CEU][hapmap]
rs17107060	0.95[JPT][hapmap]
rs17107064	0.90[JPT][hapmap]
rs17107311	1.00[CEU][hapmap]
rs34369840	0.84[EUR][1000 genomes]
rs4268454	0.82[ASN][1000 genomes]
rs4291622	0.99[ASN][1000 genomes]
rs4547039	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4578323	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7072583	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7078901	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7094314	0.92[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.95[LWK][hapmap];0.83[MEX][hapmap];0.86[MKK][hapmap];0.90[YRI][hapmap];0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7096348	1.00[CEU][hapmap];0.87[TSI][hapmap]
rs71483311	0.84[EUR][1000 genomes]
rs7894899	0.81[JPT][hapmap]
rs7901404	1.00[CEU][hapmap]
rs7902939	0.98[ASN][1000 genomes]
rs7904557	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7912629	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7917419	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7923028	1.00[CEU][hapmap];0.81[TSI][hapmap]

rSNP related genes

Symbol	Regulation type
SH2D4B	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)