SNP Report
Basic Infomation
| Name | rs4268454 dbSNP |
|---|---|
| Location | chr:10,82331696 |
| Allele | A/T |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11814516 | 0.82[ASN][1000 genomes] |
| rs12248820 | 0.89[EUR][1000 genomes] |
| rs1573973 | 0.82[ASN][1000 genomes] |
| rs2125037 | 0.87[EUR][1000 genomes] |
| rs2343555 | 0.83[EUR][1000 genomes] |
| rs2880648 | 0.88[EUR][1000 genomes] |
| rs4291622 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4547039 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4578323 | 0.82[ASN][1000 genomes] |
| rs6586068 | 0.87[EUR][1000 genomes] |
| rs7072583 | 0.82[ASN][1000 genomes] |
| rs7078901 | 0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7094314 | 0.84[ASN][1000 genomes] |
| rs7095190 | 0.89[EUR][1000 genomes] |
| rs7098909 | 0.85[EUR][1000 genomes] |
| rs7902939 | 0.81[ASN][1000 genomes] |
| rs7904557 | 0.82[ASN][1000 genomes] |
| rs7905141 | 0.86[EUR][1000 genomes] |
| rs7912629 | 0.82[ASN][1000 genomes] |
| rs7914650 | 0.89[EUR][1000 genomes] |
| rs7917419 | 0.82[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SH2D4B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014