SNP Report
Basic Infomation
| Name | rs7914650 dbSNP |
|---|---|
| Location | chr:10,82325999 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11186034 | 0.87[CHB][hapmap];0.84[ASN][1000 genomes] |
| rs11186045 | 0.87[CHB][hapmap];0.85[ASN][1000 genomes] |
| rs12248820 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12259358 | 0.80[CEU][hapmap] |
| rs12260841 | 0.80[CHB][hapmap] |
| rs12268524 | 1.00[CEU][hapmap];0.82[TSI][hapmap] |
| rs12413288 | 0.80[CHB][hapmap] |
| rs1870136 | 0.89[ASW][hapmap];0.80[CHB][hapmap];0.84[GIH][hapmap];0.83[JPT][hapmap];0.83[LWK][hapmap] |
| rs2125037 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2168719 | 0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2343555 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs2880648 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4268454 | 0.89[EUR][1000 genomes] |
| rs4291622 | 0.92[EUR][1000 genomes] |
| rs4547039 | 1.00[CEU][hapmap];0.90[GIH][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes] |
| rs61372324 | 0.84[ASN][1000 genomes] |
| rs6586067 | 0.82[ASN][1000 genomes] |
| rs6586068 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6586088 | 0.95[CEU][hapmap] |
| rs7078901 | 1.00[CEU][hapmap];0.90[GIH][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes] |
| rs7079232 | 0.85[ASN][1000 genomes] |
| rs7095190 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7098909 | 1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];0.80[MEX][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7894899 | 1.00[CEU][hapmap] |
| rs7900954 | 0.86[CHB][hapmap];0.84[ASN][1000 genomes] |
| rs7904697 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7905141 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7905288 | 0.85[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SH2D4B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014