SNP Report
Basic Infomation
| Name | rs1870136 dbSNP |
|---|---|
| Location | chr:10,82307117 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11186011 | 0.93[ASN][1000 genomes] |
| rs11186034 | 0.93[CHB][hapmap];0.83[JPT][hapmap] |
| rs11186045 | 1.00[CHB][hapmap];0.83[JPT][hapmap] |
| rs12248820 | 0.80[CHB][hapmap];0.84[GIH][hapmap];0.83[JPT][hapmap] |
| rs12260841 | 1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs12412983 | 0.92[ASN][1000 genomes] |
| rs12413288 | 1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs2168719 | 0.80[CHB][hapmap];0.83[JPT][hapmap] |
| rs2343527 | 0.86[CHB][hapmap];0.82[CHD][hapmap];0.88[ASN][1000 genomes] |
| rs2343555 | 1.00[ASN][1000 genomes] |
| rs2880648 | 0.80[CHB][hapmap];0.89[JPT][hapmap] |
| rs60575307 | 0.87[ASN][1000 genomes] |
| rs6586068 | 0.80[CHB][hapmap];0.82[JPT][hapmap] |
| rs7068369 | 0.93[CHB][hapmap];0.89[CHD][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs7079069 | 0.95[ASN][1000 genomes] |
| rs7097741 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7098909 | 1.00[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs7099612 | 0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs73307107 | 0.87[ASN][1000 genomes] |
| rs7900954 | 0.93[CHB][hapmap] |
| rs7914650 | 0.89[ASW][hapmap];0.80[CHB][hapmap];0.84[GIH][hapmap];0.83[JPT][hapmap];0.83[LWK][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SH2D4B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014