SNP Report
Basic Infomation
| Name | rs7079069 dbSNP |
|---|---|
| Location | chr:10,82302852 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11186011 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11186111 | 0.83[EUR][1000 genomes] |
| rs12260841 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12412983 | 0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12413288 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs17107060 | 0.83[EUR][1000 genomes] |
| rs1870136 | 0.95[ASN][1000 genomes] |
| rs2343527 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2343555 | 0.95[ASN][1000 genomes] |
| rs28493052 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs60575307 | 1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7068369 | 0.91[ASN][1000 genomes] |
| rs7097741 | 0.91[ASN][1000 genomes] |
| rs7098909 | 0.94[ASN][1000 genomes] |
| rs7099612 | 0.96[ASN][1000 genomes] |
| rs73307107 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs73307156 | 0.83[EUR][1000 genomes] |
| rs73307172 | 0.83[EUR][1000 genomes] |
| rs7900954 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000226659 | Distal transcriptional regulation |
| SH2D4B | Distal transcriptional regulation |
| SH2D4B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014