SNP Report

Basic Infomation

Name	rs12260841 dbSNP
Location	chr:10,82314004
Allele	A/C

LD-proxy of rSNPs(r²>0.8) (count: 28)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11186011	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11186034	0.88[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11186045	0.93[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs11186111	0.83[EUR][1000 genomes]
rs12248820	0.80[CHB][hapmap]
rs12412983	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12413288	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17107060	0.83[EUR][1000 genomes]
rs1870136	1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs2343527	0.86[CHB][hapmap];0.88[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2343555	0.92[ASN][1000 genomes]
rs28493052	1.00[EUR][1000 genomes]
rs2880648	0.81[JPT][hapmap]
rs60575307	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6586068	0.80[CHB][hapmap]
rs7067940	0.89[YRI][hapmap]
rs7068369	0.93[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7079069	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7079232	0.80[ASN][1000 genomes]
rs7097741	0.88[ASN][1000 genomes]
rs7098909	1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs7099612	0.90[ASN][1000 genomes]
rs73307107	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73307156	0.83[EUR][1000 genomes]
rs73307172	0.83[EUR][1000 genomes]
rs7900954	0.81[CHB][hapmap];0.88[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7905288	0.80[ASN][1000 genomes]
rs7914650	0.80[CHB][hapmap]

rSNP related genes

Symbol	Regulation type
SH2D4B	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)