SNP Report
Basic Infomation
| Name | rs11186034 dbSNP |
|---|---|
| Location | chr:10,82316327 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11186011 | 0.90[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs11186045 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs12248820 | 0.87[CHB][hapmap];0.82[ASN][1000 genomes] |
| rs12260841 | 0.88[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12412983 | 0.90[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12413288 | 0.88[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs1870136 | 0.93[CHB][hapmap];0.83[JPT][hapmap] |
| rs2125037 | 0.84[ASN][1000 genomes] |
| rs2168719 | 0.88[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs2343527 | 0.82[JPT][hapmap] |
| rs2880648 | 0.88[CHB][hapmap];0.81[ASN][1000 genomes] |
| rs61372324 | 0.97[ASN][1000 genomes] |
| rs6586067 | 0.97[ASN][1000 genomes] |
| rs6586068 | 0.87[CHB][hapmap];0.84[ASN][1000 genomes] |
| rs7067940 | 0.90[YRI][hapmap] |
| rs7068369 | 0.87[CHB][hapmap];0.94[JPT][hapmap] |
| rs7079232 | 0.99[ASN][1000 genomes] |
| rs7095190 | 0.84[ASN][1000 genomes] |
| rs7098909 | 0.93[CHB][hapmap];0.83[JPT][hapmap] |
| rs7900954 | 0.93[CHB][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7904697 | 0.84[ASN][1000 genomes] |
| rs7905141 | 0.82[ASN][1000 genomes] |
| rs7905288 | 0.99[ASN][1000 genomes] |
| rs7914650 | 0.87[CHB][hapmap];0.84[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SH2D4B | Distal transcriptional regulation |
| SH2D4B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014