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rVarBase
SNP Report
Basic Infomation
Name
rs28493052  
dbSNP
Location
chr:10,82287708
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11186011
1.00[EUR][1000 genomes]
rs11186111
0.83[EUR][1000 genomes]
rs12260841
1.00[EUR][1000 genomes]
rs12412983
0.86[EUR][1000 genomes]
rs12413288
1.00[EUR][1000 genomes]
rs17107060
0.83[EUR][1000 genomes]
rs2343527
1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60575307
1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7079069
0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7099612
0.80[ASN][1000 genomes]
rs73307107
0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73307156
0.83[EUR][1000 genomes]
rs73307172
0.83[EUR][1000 genomes]
rs7900954
1.00[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
ENSG00000226659
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)