SNP Report

Basic Infomation

Name	rs12259358 dbSNP
Location	chr:10,82346882
Allele	C/G

LD-proxy of rSNPs(r²>0.8) (count: 47)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11186148	0.94[CHB][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11186151	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12248820	0.80[CEU][hapmap]
rs12268524	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12572336	0.93[ASN][1000 genomes]
rs12773027	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12777577	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17107222	0.89[JPT][hapmap]
rs1913756	0.91[ASN][1000 genomes]
rs1913758	0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1913759	0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1913760	0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2168719	1.00[CEU][hapmap]
rs2880648	0.81[CEU][hapmap]
rs34215840	0.93[ASN][1000 genomes]
rs34279451	0.92[ASN][1000 genomes]
rs35154155	0.91[ASN][1000 genomes]
rs35976818	0.90[ASN][1000 genomes]
rs36095216	0.98[ASN][1000 genomes]
rs4348832	0.89[JPT][hapmap]
rs4547039	0.80[CEU][hapmap]
rs60390678	0.93[ASN][1000 genomes]
rs6586086	0.87[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6586087	0.91[ASN][1000 genomes]
rs6586088	0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6586090	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7067623	0.90[ASN][1000 genomes]
rs7072046	0.83[ASN][1000 genomes]
rs7072057	0.83[ASN][1000 genomes]
rs7072467	0.87[ASN][1000 genomes]
rs7078901	0.80[CEU][hapmap]
rs7081555	0.88[ASN][1000 genomes]
rs7081964	0.92[ASN][1000 genomes]
rs7082413	0.84[ASN][1000 genomes]
rs7087827	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7087969	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7091134	0.92[ASN][1000 genomes]
rs7092045	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7092609	0.90[ASN][1000 genomes]
rs7098909	0.80[CEU][hapmap]
rs7100769	0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7894899	0.81[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7897591	0.91[ASN][1000 genomes]
rs7909966	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7914650	0.80[CEU][hapmap]
rs7917014	0.90[JPT][hapmap]
rs7920037	0.91[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SH2D4B	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)