SNP Report
Basic Infomation
| Name | rs17107222 dbSNP |
|---|---|
| Location | chr:10,82355408 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12259358 | 0.89[JPT][hapmap] |
| rs12268524 | 0.85[CHD][hapmap];0.90[JPT][hapmap] |
| rs12773027 | 0.90[JPT][hapmap] |
| rs12777577 | 0.85[CHD][hapmap];0.90[JPT][hapmap] |
| rs17107283 | 0.94[ASN][1000 genomes] |
| rs1913758 | 0.90[JPT][hapmap] |
| rs1913759 | 0.85[CHD][hapmap];0.90[JPT][hapmap] |
| rs1913760 | 0.85[CHD][hapmap];0.90[JPT][hapmap] |
| rs4348832 | 0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.96[ASN][1000 genomes] |
| rs6586086 | 0.90[JPT][hapmap] |
| rs6586088 | 0.85[CHD][hapmap];0.90[JPT][hapmap] |
| rs7087827 | 0.90[JPT][hapmap] |
| rs7087969 | 0.90[JPT][hapmap] |
| rs7092045 | 0.90[JPT][hapmap] |
| rs7100769 | 0.85[CHD][hapmap];0.90[JPT][hapmap] |
| rs72805723 | 0.95[ASN][1000 genomes] |
| rs72805736 | 0.98[ASN][1000 genomes] |
| rs72805741 | 1.00[AFR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7909966 | 0.83[CHD][hapmap];0.90[JPT][hapmap] |
| rs7917014 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SH2D4B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014